Below is my project's structure:
spark-application:
scala1.scala // I am calling the java class from this class.
java.java // this will submit another spark application to the yarn cluster.
The spark-application that is being triggered by java class:
scala2.scala
My reference tutorial is here
When I run my java class from scala1.scala via spark-submit in the local mode the second spark application scala2.scala is getting triggered and working as expected.
But, when I run the same application via spark-submit in yarn cluster it is showing the below error!
Error: Could not find or load main class org.apache.spark.deploy.yarn.ApplicationMaster Application application_1493671618562_0072 failed 5 times due to AM Container for appattempt_1493671618562_0072_000005 exited with exitCode: 1 For more detailed output, check the application tracking page: http://headnode.internal.cloudapp.net:8088/cluster/app/application_1493671618562_0072 Then click on links to logs of each attempt. Diagnostics: Exception from container-launch. Container id: container_e02_1493671618562_0072_05_000001 Exit code: 1 Exception message: /mnt/resource/hadoop/yarn/local/usercache/helixuser/appcache/application_1493671618562_0072/container_e02_1493671618562_0072_05_000001/launch_container.sh: line 26: $PWD:$PWD/spark_conf:$PWD/spark.jar:$HADOOP_CONF_DIR:/usr/hdp/current/hadoop-client/:/usr/hdp/current/hadoop-client/lib/:/usr/hdp/current/hadoop-hdfs-client/:/usr/hdp/current/hadoop-hdfs-client/lib/:/usr/hdp/current/hadoop-yarn-client/:/usr/hdp/current/hadoop-yarn-client/lib/:$PWD/mr-framework/hadoop/share/hadoop/mapreduce/:$PWD/mr-framework/hadoop/share/hadoop/mapreduce/lib/:$PWD/mr-framework/hadoop/share/hadoop/common/:$PWD/mr-framework/hadoop/share/hadoop/common/lib/:$PWD/mr-framework/hadoop/share/hadoop/yarn/:$PWD/mr-framework/hadoop/share/hadoop/yarn/lib/:$PWD/mr-framework/hadoop/share/hadoop/hdfs/:$PWD/mr-framework/hadoop/share/hadoop/hdfs/lib/:$PWD/mr-framework/hadoop/share/hadoop/tools/lib/:/usr/hdp/${hdp.version}/hadoop/lib/hadoop-lzo-0.6.0.${hdp.version}.jar:/etc/hadoop/conf/secure: bad substitution Stack trace: ExitCodeException exitCode=1: /mnt/resource/hadoop/yarn/local/usercache/helixuser/appcache/application_1493671618562_0072/container_e02_1493671618562_0072_05_000001/launch_container.sh: line 26: $PWD:$PWD/spark_conf:$PWD/spark.jar:$HADOOP_CONF_DIR:/usr/hdp/current/hadoop-client/:/usr/hdp/current/hadoop-client/lib/:/usr/hdp/current/hadoop-hdfs-client/:/usr/hdp/current/hadoop-hdfs-client/lib/:/usr/hdp/current/hadoop-yarn-client/:/usr/hdp/current/hadoop-yarn-client/lib/:$PWD/mr-framework/hadoop/share/hadoop/mapreduce/:$PWD/mr-framework/hadoop/share/hadoop/mapreduce/lib/:$PWD/mr-framework/hadoop/share/hadoop/common/:$PWD/mr-framework/hadoop/share/hadoop/common/lib/:$PWD/mr-framework/hadoop/share/hadoop/yarn/:$PWD/mr-framework/hadoop/share/hadoop/yarn/lib/:$PWD/mr-framework/hadoop/share/hadoop/hdfs/:$PWD/mr-framework/hadoop/share/hadoop/hdfs/lib/:$PWD/mr-framework/hadoop/share/hadoop/tools/lib/:/usr/hdp/${hdp.version}/hadoop/lib/hadoop-lzo-0.6.0.${hdp.version}.jar:/etc/hadoop/conf/secure: bad substitution at org.apache.hadoop.util.Shell.runCommand(Shell.java:933) at org.apache.hadoop.util.Shell.run(Shell.java:844) at org.apache.hadoop.util.Shell$ShellCommandExecutor.execute(Shell.java:1123) at org.apache.hadoop.yarn.server.nodemanager.DefaultContainerExecutor.launchContainer(DefaultContainerExecutor.java:225) at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:317) at org.apache.hadoop.yarn.server.nodemanager.containermanager.launcher.ContainerLaunch.call(ContainerLaunch.java:83) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Container exited with a non-zero exit code 1 Failing this attempt. Failing the application. My project's directory structure is given below:
lrwxrwxrwx 1 yarn hadoop 95 May 5 06:03 __app__.jar -> /mnt/resource/hadoop/yarn/local/filecache/10/sparkfiller-1.0-SNAPSHOT-jar-with-dependencies.jar -rw-r--r-- 1 yarn hadoop 74 May 5 06:03 container_tokens -rwx------ 1 yarn hadoop 710 May 5 06:03 default_container_executor_session.sh -rwx------ 1 yarn hadoop 764 May 5 06:03 default_container_executor.sh -rwx------ 1 yarn hadoop 6433 May 5 06:03 launch_container.sh lrwxrwxrwx 1 yarn hadoop 102 May 5 06:03 __spark_conf__ -> /mnt/resource/hadoop/yarn/local/usercache/helixuser/filecache/80/__spark_conf__6125877397366945561.zip lrwxrwxrwx 1 yarn hadoop 125 May 5 06:03 __spark__.jar -> /mnt/resource/hadoop/yarn/local/usercache/helixuser/filecache/81/spark-assembly-1.6.3.2.5.4.0-121-hadoop2.7.3.2.5.4.0-121.jar drwx--x--- 2 yarn hadoop 4096 May 5 06:03 tmp find -L . -maxdepth 5 -ls: 3933556 4 drwx--x--- 3 yarn hadoop 4096 May 5 06:03 . 3933558 4 drwx--x--- 2 yarn hadoop 4096 May 5 06:03 ./tmp 3933562 4 -rw-r--r-- 1 yarn hadoop 60 May 5 06:03 ./.launch_container.sh.crc 3933517 185944 -r-x------ 1 yarn hadoop 190402950 May 5 06:03 ./__spark__.jar 3933564 4 -rw-r--r-- 1 yarn hadoop 16 May 5 06:03 ./.default_container_executor_session.sh.crc 3933518 4 drwx------ 2 yarn hadoop 4096 May 5 06:03 ./__spark_conf__ 3933548 4 -r-x------ 1 yarn hadoop 945 May 5 06:03 ./__spark_conf__/taskcontroller.cfg 3933543 4 -r-x------ 1 yarn hadoop 249 May 5 06:03 ./__spark_conf__/slaves 3933541 4 -r-x------ 1 yarn hadoop 2316 May 5 06:03 ./__spark_conf__/ssl-client.xml.example 3933520 4 -r-x------ 1 yarn hadoop 1734 May 5 06:03 ./__spark_conf__/log4j.properties 3933526 4 -r-x------ 1 yarn hadoop 265 May 5 06:03 ./__spark_conf__/hadoop-metrics2-azure-file-system.properties 3933536 4 -r-x------ 1 yarn hadoop 1045 May 5 06:03 ./__spark_conf__/container-executor.cfg 3933519 8 -r-x------ 1 yarn hadoop 5685 May 5 06:03 ./__spark_conf__/hadoop-env.sh 3933531 4 -r-x------ 1 yarn hadoop 2358 May 5 06:03 ./__spark_conf__/topology_script.py 3933547 8 -r-x------ 1 yarn hadoop 4113 May 5 06:03 ./__spark_conf__/mapred-queues.xml.template 3933528 4 -r-x------ 1 yarn hadoop 744 May 5 06:03 ./__spark_conf__/ssl-client.xml 3933544 4 -r-x------ 1 yarn hadoop 417 May 5 06:03 ./__spark_conf__/topology_mappings.data 3933549 4 -r-x------ 1 yarn hadoop 342 May 5 06:03 ./__spark_conf__/__spark_conf__.properties 3933523 4 -r-x------ 1 yarn hadoop 247 May 5 06:03 ./__spark_conf__/hadoop-metrics2-adl-file-system.properties 3933535 4 -r-x------ 1 yarn hadoop 1020 May 5 06:03 ./__spark_conf__/commons-logging.properties 3933525 24 -r-x------ 1 yarn hadoop 22138 May 5 06:03 ./__spark_conf__/yarn-site.xml 3933529 4 -r-x------ 1 yarn hadoop 2450 May 5 06:03 ./__spark_conf__/capacity-scheduler.xml 3933538 4 -r-x------ 1 yarn hadoop 2490 May 5 06:03 ./__spark_conf__/hadoop-metrics.properties 3933534 12 -r-x------ 1 yarn hadoop 8754 May 5 06:03 ./__spark_conf__/hdfs-site.xml 3933533 8 -r-x------ 1 yarn hadoop 4261 May 5 06:03 ./__spark_conf__/yarn-env.sh 3933532 4 -r-x------ 1 yarn hadoop 1335 May 5 06:03 ./__spark_conf__/configuration.xsl 3933530 4 -r-x------ 1 yarn hadoop 758 May 5 06:03 ./__spark_conf__/mapred-site.xml.template 3933545 4 -r-x------ 1 yarn hadoop 1000 May 5 06:03 ./__spark_conf__/ssl-server.xml 3933527 8 -r-x------ 1 yarn hadoop 4680 May 5 06:03 ./__spark_conf__/core-site.xml 3933522 8 -r-x------ 1 yarn hadoop 5783 May 5 06:03 ./__spark_conf__/hadoop-metrics2.properties 3933542 4 -r-x------ 1 yarn hadoop 1308 May 5 06:03 ./__spark_conf__/hadoop-policy.xml 3933540 4 -r-x------ 1 yarn hadoop 1602 May 5 06:03 ./__spark_conf__/health_check 3933537 8 -r-x------ 1 yarn hadoop 4221 May 5 06:03 ./__spark_conf__/task-log4j.properties 3933521 8 -r-x------ 1 yarn hadoop 7596 May 5 06:03 ./__spark_conf__/mapred-site.xml 3933546 4 -r-x------ 1 yarn hadoop 2697 May 5 06:03 ./__spark_conf__/ssl-server.xml.example 3933539 4 -r-x------ 1 yarn hadoop 752 May 5 06:03 ./__spark_conf__/mapred-env.sh 3932820 135852 -r-xr-xr-x 1 yarn hadoop 139105807 May 4 22:53 ./__app__.jar 3933566 4 -rw-r--r-- 1 yarn hadoop 16 May 5 06:03 ./.default_container_executor.sh.crc 3933563 4 -rwx------ 1 yarn hadoop 710 May 5 06:03 ./default_container_executor_session.sh 3933559 4 -rw-r--r-- 1 yarn hadoop 74 May 5 06:03 ./container_tokens 3933565 4 -rwx------ 1 yarn hadoop 764 May 5 06:03 ./default_container_executor.sh 3933560 4 -rw-r--r-- 1 yarn hadoop 12 May 5 06:03 ./.container_tokens.crc 3933561 8 -rwx------ 1 yarn hadoop 6433 May 5 06:03 ./launch_container.sh broken symlinks(find -L . -maxdepth 5 -type l -ls): Below is the java code that invokes the second Spark application:
import org.apache.spark.deploy.yarn.Client; import org.apache.spark.deploy.yarn.ClientArguments; import org.apache.hadoop.conf.Configuration; import org.apache.spark.SparkConf; import org.apache.spark.SparkException; public class CallingSparkJob { public void submitJob(String latestreceivedpitrL,String newPtr) throws Exception { System.out.println("In submit job method"); try{ System.out.println("Building a spark command"); // prepare arguments to be passed to // org.apache.spark.deploy.yarn.Client object String[] args = new String[] { // the name of your application "--name", "name", // "--master", // "yarn", // "--deploy-mode", // "cluster", // "--conf", "spark.yarn.executor.memoryOverhead=600", "--conf", "spark.yarn.submit.waitAppCompletion=false", // memory for driver (optional) "--driver-memory", "1000M", "--num-executors", "2", "--executor-cores", "2", // path to your application's JAR file // required in yarn-cluster mode "--jar", "wasb://storage_account_container@storageaccount.blob.core.windows.net/user/ankushuser/sparkfiller/sparkfiller-1.0-SNAPSHOT-jar-with-dependencies.jar", // name of your application's main class (required) "--class", "com.test.SparkFiller", // comma separated list of local jars that want // SparkContext.addJar to work with // "--addJars", // "/Users/mparsian/zmp/github/data-algorithms-book/lib/spark-assembly-1.5.2-hadoop2.6.0.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/log4j-1.2.17.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/junit-4.12-beta-2.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/jsch-0.1.42.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/JeraAntTasks.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/jedis-2.5.1.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/jblas-1.2.3.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/hamcrest-all-1.3.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/guava-18.0.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-math3-3.0.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-math-2.2.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-logging-1.1.1.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-lang3-3.4.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-lang-2.6.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-io-2.1.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-httpclient-3.0.1.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-daemon-1.0.5.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-configuration-1.6.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-collections-3.2.1.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/commons-cli-1.2.jar,/Users/mparsian/zmp/github/data-algorithms-book/lib/cloud9-1.3.2.jar", // argument 1 for latestreceivedpitrL "--arg", latestreceivedpitrL, // argument 2 for newPtr "--arg", newPtr, "--arg", "yarn-cluster" }; System.out.println("create a Hadoop Configuration object"); // create a Hadoop Configuration object Configuration config = new Configuration(); // identify that you will be using Spark as YARN mode System.setProperty("SPARK_YARN_MODE", "true"); // create an instance of SparkConf object SparkConf sparkConf = new SparkConf(); sparkConf.setSparkHome("/usr/hdp/current/spark-client"); // sparkConf.setMaster("yarn"); sparkConf.setMaster("yarn-cluster"); // sparkConf.setAppName("spark-yarn"); // sparkConf.set("master", "yarn"); // sparkConf.set("spark.submit.deployMode", "cluster"); // worked // create ClientArguments, which will be passed to Client // ClientArguments cArgs = new ClientArguments(args); ClientArguments cArgs = new ClientArguments(args, sparkConf); // create an instance of yarn Client client Client client = new Client(cArgs, config, sparkConf); // submit Spark job to YARN client.run(); }catch(Exception e){ System.out.println("Error submitting spark Job"); System.out.println(e.getMessage()); } } } The spark-submit command used to run the first spark application locally:
spark-submit --class scala1 --master yarn --deploy-mode cluster --num-executors 2 --executor-cores 2 --conf spark.yarn.executor.memoryOverhead=600 --conf spark.yarn.submit.waitAppCompletion=false /home/ankushuser/kafka_retry/kafka_retry_test/sparkflightaware/target/sparkflightaware-0.0.1-SNAPSHOT-jar-with-dependencies.jar
If I run this spark-submit command locally it is invoking the java class and the spark-submit command for the second scala2 application is working fine.
If I run it in yarn mode, then I am facing the issue.
Thank you for your help.
1 Answers
Answers 1
Since there's a bounty, I'll repost this as a reply as well -- but in reality I would like to flag this as a duplicate, since the actual Exception is the one covered in another question, and answered:
Alternatively, use
--driver-java-options="-Dhdp.version=INSERT_VERSION_STRING_HERE" --conf "spark.executor.extraJavaOptions=-Dhdp.version=INSERT_VERSION_STRING_HERE" in your spark-submit and make sure to use the correct version string, as in the subdirectory of /usr/hdp.
If you want to stick with calling client.submit from your code, then you need to put those lines into the --arg you build in your code.
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